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Mukherjee et al. Specifications in Genomic Sciences 2015, 10:eight http://www.standardsingenomics.com/content/10/1/EXTENDED GENOME REPORTOpen AccessHigh high-quality draft genome sequence and investigation of Pontibacter roseus sort strain SRC-1T (DSM 17521T) isolated from muddy waters of the drainage system in Chandigarh, IndiaSupratim Mukherjee1, PubMed ID:https://www.ncbi.nlm.nih.gov/pubmed/11011031 Alla Lapidus2,three, Nicole Shapiro1, Jan-Fang Cheng1, James Han1, TBK Reddy1, Marcel Huntemann1, Natalia Ivanova1, Natalia Mikhailova1, Amy Chen5, Krishna Palaniappan5, Stefan Spring4, Markus G er4, Victor Markowitz5, Tanja Woyke1, Brian J Tindall4, Hans-Peter Klenk4, Nikos C Kyrpides1,6 and Amrita Pati1*AbstractPontibacter roseus is really a member of genus Pontibacter loved ones Cytophagaceae, class Cytophagia. Though the sort species in the genus Pontibacter actiniarum was isolated in 2005 from a marine atmosphere, subsequent species of the exact same genus have Carbonic Anhydrase 1, Human (His) been found in different types of habitats starting from seawater, sediment, desert soil, rhizosphere, contaminated web sites, solar saltern and muddy h2o. In this article we describe the capabilities of Pontibacter roseus pressure SRC-1T along with its entire genome sequence and annotation from a lifestyle of DSM 17521T. The four,581,480 bp long draft genome is composed of twelve scaffolds with 4,003 protein-coding and 50 RNA genes and it is a part of Genomic Encyclopedia of Kind Strains: KMG-I project. Keyword phrases: Aerobic, Gram-negative, Non-motile, Obligate aerobe, Halotolerant, Menaquinone, GEBA, KMG-IIntroduction The genus Pontibacter was to start with reported by Nedashkovskaya et al. [1] in which they discovered and described a menaquinone making strain isolated from sea anemones. Numerous new species of your exact same genus have been documented within the literature given that then. On top of that to Pontibacter roseus, you will find eighteen species with validly posted names belonging to Pontibacter genus as of creating this manuscript. Members of genus Pontibacter like P. roseus, is of interest for genomic exploration because of to their means to synthesize and use menaquinone-7 (MK-7) given that the most important respiratory quinone as well as to facilitate practical genomics experiments inside of the team. Strain SRC-1T (= DSM 17521 = CCTCC AB 207222 = CIP 109903 = MTCC 7260) is the kind strain of Pontibacter roseus, which was isolated from muddy h2o from an occasional drainage technique of the household area in Chandigarh, India [2]. P. roseus SRC-1T was at first described to generally be Effluviibacter roseus SRC-1T primarily* Correspondence: apati@lbl.gov 1 DOE Joint Genome Institute, Walnut Creek, California, United states Total list of writer details is out there at the close of your articledue to its non-motile character and fatty acid composition [2]. Having said that, subsequent analysis of its fatty acid profile was proven to generally be additional `Pontibacter-like' and gliding motility was noticed to become variable in other Pontibacter species [3]. Further more, its DNA G + C material, which was originally claimed as 59 mol [2], was also emended being fifty two.0?two.three mol [3], a worth much more consultant of members of your genus Pontibacter. As such, it was reclassified as Pontibacter roseus SRC-1T [3]. Listed here we present a summary classification and options for Pontibacter roseus SRC-1T, together with the genome sequence and annotation of DSM 17521T.Organism informationClassification and featuresP. roseus SRC-1T cells are non-motile, stain Gramnegative, never type spores and they are rod-shaped close to.